bharat gupta wrote:
Hi,
I generated the topology and parameter file for phosphotyrosine usin
Swiss param and during minimization, it's giving 1,4 cut off error. I
found that the cut off for 2 paris of atom is more than the default
value. So, in that what shall I do??
http://www.gromacs.org/Documentation/Errors#1-4_interaction_not_within_cut-off
http://www.gromacs.org/Documentation/Terminology/Blowing_Up
Note that this error is incredibly common and you can probably find thousands of
similar posts in the list archive (hint: search the archive). Most errors are
described in the "Errors" page above (hint: there's lots of information on the
Gromacs site, so always check there whenever you have a problem).
-Justin
--
Bharat
Ph.D. Candidate
Room No. : 7202A, 2nd Floor
Biomolecular Engineering Laboratory
Division of Chemical Engineering and Polymer Science
Pusan National University
Busan -609735
South Korea
Lab phone no. - +82-51-510-3680, +82-51-583-8343
Mobile no. - 010-5818-3680
E-mail : monu46...@yahoo.com <mailto:monu46...@yahoo.com>
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
--
gmx-users mailing list gmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-requ...@gromacs.org.
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
