Hello all, I have read many papers about using simulated annealing protocol along with experimental data. I have some questions about the protocol itself and would really appreciate if some body clears it.
The general MD simulation gets the information about forces from FF and starting with initial boltzmann distribution of velocities, the atom velocities are updated using velocity verlet (or any other integrators). But in the case of simulated annealing where there is change in temperature how are the velocities updated? Are they determined everytime from the temperature or are they updated by integrators(I know it cant be possible by integrators as they dont have the information about change in temperature). Thanks a lot for your time, Santhosh
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