Hi gmx-users, I was trying to feed make_ndx with the non-interactive script, below is my command:
The script called "choice.txt" contained: ri 1-20 ri 21-40 ri 41-60 ri 61-80 ri 81-100 ri 101-120 Initially, I used the bash shell, then csh and tcsh, but in both the cases it failed to produce the index_1.ndx file $make_ndx -f md20-80.tpr -o index_1.ndx < choice.txt > Found 162 atoms with resind.+1 in range 1-20 5 r_1-20 : 162 atoms > Found 162 atoms with resind.+1 in range 21-40 6 r_21-40 : 162 atoms > Found 162 atoms with resind.+1 in range 41-60 7 r_41-60 : 162 atoms > Found 162 atoms with resind.+1 in range 61-80 8 r_61-80 : 162 atoms > Found 162 atoms with resind.+1 in range 81-100 9 r_81-100 : 162 atoms > Found 162 atoms with resind.+1 in range 101-120 10 r_101-120 : 162 atoms ------------------------------------------------------- Program make_ndx, VERSION 4.5.4 Source code file: make_ndx.c, line: 965 Fatal error: Error reading user input For more information and tips for troubleshooting, please check the GROMACS website at http://www.gromacs.org/Documentation/Errors Kindly help. Chandan -- Chandan kumar Choudhury NCL, Pune INDIA -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists