I want to calculate secondary structure propensities of residues. Following Mark's message on thread Re: [gmx-users] secondary structure propensities of residues
I would like to get the release-4.5-patches from git (in order to get do_dssp.c). Nevertheless I found problems while trying to fetch it from git repository due to the proxy. (I followed the advices on http://www.gromacs.org/Developer_Zone/Git/Git_Tutorial#Git_behind_a_proxy $ git clone git://git.gromacs.org/gromacs.git Initialized empty Git repository in ~/gromacs/.git/ 2011/08/09 10:37:46 socat[17264] E CONNECT git.gromacs.org:9418: Forbidden fatal: The remote end hung up unexpectedly I tried the alternative suggested by Roland git clone http://repo.or.cz/r/gromacs.git Initialized empty Git repository in ~/gromacs/.git/ The gromacs directory is created and populated. After this I ran $git branch * master $git checkout --track -b release-4-5-patches origin/release-4-5-patches fatal: git checkout: updating paths is incompatible with switching branches. Did you intend to checkout 'origin/release-4-5-patches' which can not be resolved as commit? Is this a problem of the server I am using or is it just a misuse of git? Thanks 2011/3/22 Roland Schulz <rol...@utk.edu> > you can clone from http://repo.or.cz/r/gromacs.git if you have problems > with a proxy. > > On Mon, Mar 21, 2011 at 10:54 PM, Alif M Latif <prism_d...@yahoo.com>wrote: > >> Dear Gromacs Developers, >> >> Just dropping by to say THANK YOU for v4.5.4, surely is updated version of >> 4.5.3 with all the bugfixes yes?. I'm having problem getting past my >> university's proxy server to use git. Now hopefully I can continue my >> research and solve git problems later..Your hard work is greatly >> appreciated! >> >> MUHAMMAD ALIF MOHAMMAD LATIF >> Laboratory of Theoretical and Computational Chemistry >> Department of Chemistry >> Faculty of Science >> Universiti Putra Malaysia >> 43400 UPM Serdang, Selangor >> MALAYSIA >> >> >> >> -- >> gmx-users mailing list gmx-users@gromacs.org >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> Please don't post (un)subscribe requests to the list. Use the >> www interface or send it to gmx-users-requ...@gromacs.org. >> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> > > > > -- > ORNL/UT Center for Molecular Biophysics cmb.ornl.gov > 865-241-1537, ORNL PO BOX 2008 MS6309 > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >
-- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists