On 19/08/2011 5:07 PM, Anupam Nath Jha wrote:
Is it the problem with the gromacs?


Probably not. Assuming you have kept everything else constant, it is likely that
other activity on the machine or file system is delaying you somehow.

This is still likely to be true. Other activity (other users jobs, heavy I/O demand etc.) can starve GROMACS for resources. If you are doing everything the same, then something you are not controlling must be different.

Mark
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