Yao Yao wrote:
Hi Guys,
I am using g_hbond to analyze hbond between two groups. The manual says
"All hydrogen bonds between the two groups are analyzed."
Does that mean even those hbonds do not hbond to neither of the two
groups are still under consideration?
If it doesn't form a hydrogen bond, then it's not a hydrogen bond. A hydrogen
bond is defined by the criteria described in the manual. If those criteria are
not satisfied, the group does not form a hydrogen bond with whatever other group
is examined at that time.
-Justin
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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