Thanks for your kind help, I have tried as per your suggestion, the below command
g_sham -f 2d_proj.xvg -xmin -5 -xmax 5 -ls gibbs.xpm It is running without any error , but it is not giving any xpm output....... On Wed, Aug 24, 2011 at 17:18, Justin A. Lemkul <jalem...@vt.edu> wrote: > > > bipin singh wrote: >> >> Thanks for your reply, >> I am attaching the xpm file which I got from g_sham and also attaching >> the eps output got from >> xpm2ps.As you can see there is no axis range(PC1 and PC2) labeled in eps >> file. >> As the PC1 range is from -4 to +4 and PC2 range from -5 to +4, I want >> the x-axis range in eps file from -4 to +4(PC1) >> and y-axis range from -5 to +4(PC2) regardless of the data values in xpm >> file. >> But I am unable to get using .m2p file. >> > > The .m2p file can only be used to adjust axes if the data fit the range you > want already. This was unclear from your earlier post. Now that you've > said what program you used, we can solve this. g_sham allows you to set the > axis manually with the -xmin and -xmax options. Re-run g_sham with these > options to set the axes and you should have no problem. > > -Justin > >> On Wed, Aug 24, 2011 at 16:22, Justin A. Lemkul <jalem...@vt.edu> wrote: >>> >>> bipin singh wrote: >>>> >>>> Hello, >>>> I am using the below .m2p file as input for xpm2ps, but not able to >>>> get axis range label. >>>> >>> What axis range do you obtain? If your data do not actually span from -4 >>> to >>> 4, there's not much you can do. I was assuming you had data that did fit >>> this range. You also didn't say which tool produced the .xpm file; some >>> programs can be forced to adjust the data range, but others can't. >>> >>> -Justin >>> >>>> ; Matrix options >>>> titlefont = Helvetica ; Matrix title Postscript Font name >>>> titlefontsize = 20.0 ; Matrix title Font size (pt) >>>> legend = yes ; Show the legend >>>> legendfont = Helvetica ; Legend name Postscript Font name >>>> legendfontsize = 12.0 ; Legend name Font size (pt) >>>> legendlabel ; Used when there is none in the .xpm >>>> legend2label ; Id. when merging two xpm's >>>> xbox = 0 ; x-size of a matrix element >>>> ybox = 0 ; y-size of a matrix element >>>> matrixspacing = 20.0 ; Space between 2 matrices >>>> xoffset = 0.0 ; Between matrix and bounding box >>>> yoffset = 0.0 ; Between matrix and bounding box >>>> >>>> ; X-axis options >>>> x-lineat0value = no ; Draw line at matrix value==0 >>>> x-major = 4 ; Major tick spacing >>>> x-minor = 2 ; Id. Minor ticks >>>> x-firstmajor = 0 ; Offset for major tick >>>> x-majorat0 = no ; Additional Major tick at first frame >>>> x-majorticklen = 8.0 ; Length of major ticks >>>> x-minorticklen = 4.0 ; Id. Minor ticks >>>> x-label = ; Used when there is none in the .xpm >>>> x-font = Helvetica ; Axis label PostScript Font >>>> x-fontsize = 12 ; Axis label Font size (pt) >>>> x-tickfont = Helvetica ; Tick label PostScript Font >>>> x-tickfontsize = 8 ; Tick label Font size (pt) >>>> >>>> ;Y-axis options >>>> y-lineat0value = no >>>> y-major = 4 >>>> y-minor = 2 >>>> y-firstmajor = 0 >>>> y-majorat0 = no >>>> y-majorticklen = 8.0 >>>> y-minorticklen = 4.0 >>>> y-label = >>>> y-fontsize = 12 >>>> y-font = Helvetica >>>> y-tickfontsize = 8 >>>> y-tickfont = Helvetica >>>> >>>> On Wed, Aug 24, 2011 at 00:52, Justin A. Lemkul <jalem...@vt.edu> wrote: >>>>> >>>>> bipin singh wrote: >>>>>> >>>>>> Hello, >>>>>> >>>>>> I have xpm matrix file, for converting this file to ps format I am >>>>>> using >>>>>> xpm2ps >>>>>> e.g: xpm2ps -f file.xpm -o file.eps . But there is no axis range label >>>>>> mentioned for x and y-axis, >>>>>> in ps file.Please let me know how to set x and y axis range label in >>>>>> ps >>>>>> file. >>>>>> for example I want to set the x and y-axis range from -4 to +4. >>>>>> >>>>>> >>>>> Use an .m2p file: >>>>> >>>>> http://manual.gromacs.org/online/m2p.html >>>>> >>>>> -Justin >>>>> >>>>> -- >>>>> ======================================== >>>>> >>>>> Justin A. Lemkul >>>>> Ph.D. Candidate >>>>> ICTAS Doctoral Scholar >>>>> MILES-IGERT Trainee >>>>> Department of Biochemistry >>>>> Virginia Tech >>>>> Blacksburg, VA >>>>> jalemkul[at]vt.edu | (540) 231-9080 >>>>> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin >>>>> >>>>> ======================================== >>>>> -- >>>>> gmx-users mailing list gmx-users@gromacs.org >>>>> http://lists.gromacs.org/mailman/listinfo/gmx-users >>>>> Please search the archive at >>>>> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >>>>> Please don't post (un)subscribe requests to the list. Use the www >>>>> interface >>>>> or send it to gmx-users-requ...@gromacs.org. >>>>> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >>>>> >>>> >>>> >>> -- >>> ======================================== >>> >>> Justin A. Lemkul >>> Ph.D. Candidate >>> ICTAS Doctoral Scholar >>> MILES-IGERT Trainee >>> Department of Biochemistry >>> Virginia Tech >>> Blacksburg, VA >>> jalemkul[at]vt.edu | (540) 231-9080 >>> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin >>> >>> ======================================== >>> -- >>> gmx-users mailing list gmx-users@gromacs.org >>> http://lists.gromacs.org/mailman/listinfo/gmx-users >>> Please search the archive at >>> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >>> Please don't post (un)subscribe requests to the list. Use the www >>> interface >>> or send it to gmx-users-requ...@gromacs.org. >>> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >>> >> >> >> > > -- > ======================================== > > Justin A. Lemkul > Ph.D. Candidate > ICTAS Doctoral Scholar > MILES-IGERT Trainee > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > ======================================== > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- ----------------------- Regards, Bipin Singh -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. 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