Hi Dear, I am doing simulation with three ligand so that I have applied deprecated force field to the system.
I went through the reference which you cited to the following error. I understood the error that It could be a clashes. It wanted to remove atom clashes from my coordinate file, so Is there any option to do the same. help me......... Program grompp, VERSION 4.0.7 Source code file: ../../../../src/kernel/toppush.c, line: 947 Fatal error: Atomtype NR not found -- ** Ithayaraja M, Research Scholar, Department of Bionformatics, Bharathiar University, Coimbatore 641 046, Tamil Nadu India
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