Parthasarathi, Ramya wrote:
Hi,
I am trying to write a code for Deuterium order parameter of DOPC lipid.
I went through the code in gmx_order.c, I did the following,
1. I took the carbons in the chain, and found its neighbors.
2. Took the bilayer normal and found the angle between the bilayer
normal and the –CH molecular axis.
3. Took care of the periodic boundary conditions since I use NPT
ensemble.
But the code in gmx_order.c in GROMACS tries to do a lot of things other
than this, as I don’t know C or C++ language that it is using, I don’t
know what else I am supposed to include.
Can someone please help me?
My last reply should have given you some indication that your code is wrong, but
the purpose of this list is not to critique your coding or teach you how to
write programs. You've not given any real specifics on what you're doing aside
from a basic outline that suggests the overall workflow is correct. The end
result, however, is not, and that's all anyone can tell. You'd be best served
trying to learn how g_order works, or otherwise find suitable code in a language
with which you are familiar.
-Justin
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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