Hi gromacs Users, Am using g_dist to find the distance between water and protein. for that i made a index file such as-
a CA(protein atoms) a OW(water atoms) i then run this cmd- g_dist -f md.xtc -s md.tpr -n index.ndx -e 500 -dist 0.35 instead of getting the result for protein-SOL distance . my output shows SOL-OW distance as seen below- t: 1 136 SOL 2336 OW 0.772373 (nm) can anyone tell me whats wrong with this. Thanks
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