hi Justin, As far i referred the OW,HW1 etc are water atoms so how can it be distance between the SOL protein atoms, instead it is SOL water atoms.
Thanks On Mon, Sep 12, 2011 at 4:49 PM, Justin A. Lemkul <jalem...@vt.edu> wrote: > > > aiswarya pawar wrote: > >> Hi Users, >> >> Am using g_dist to find the distance between water and protein. but my >> output has the values of SOL-water distance. >> >> t: 1 136 SOL 2336 OW 0.772373 (nm) >> >> > This is not a water-water distance, it is the output of the -dist option > telling you that water molecule 136 has its OW atom at 0.7723273 nm from > whatever your reference group is. > > -Justin > > -- > ==============================**========== > > Justin A. Lemkul > Ph.D. Candidate > ICTAS Doctoral Scholar > MILES-IGERT Trainee > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.**vt.edu/Pages/Personal/justin<http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin> > > ==============================**========== > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/**mailman/listinfo/gmx-users<http://lists.gromacs.org/mailman/listinfo/gmx-users> > Please search the archive at http://www.gromacs.org/** > Support/Mailing_Lists/Search<http://www.gromacs.org/Support/Mailing_Lists/Search>before > posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to gmx-users-requ...@gromacs.org. > Can't post? Read > http://www.gromacs.org/**Support/Mailing_Lists<http://www.gromacs.org/Support/Mailing_Lists> >
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