Dear Gromacs users, I have downloaded the POPC bilayer molecular coordinates with charmmff equilibrated from Dr. Klauda's website. In this site it is mentioned
Note: If you run these simulations in NAMD you MUST use NAMD 2.7b3 with vdw ForceSwitching turned on; what does vdw ForceSwitching turned on mean, is it related to adding few more parameters to mdp files? like rlist = 1.2 rlistlong = 1.4 rcoulomb = 1.2 rvdw = 1.0 vdwtype = switch rvdw_switch = 0.8 coulombtype = PME pme_order = 4 fourierspacing = 0.16 and , does this apply to gromacs also, if i use these lipid bilayers to run simulations in gromacs. I have one more question, i want to increase this bilayer containing 72 lipids to 250 lipids, so how can i do this or can i get it downloaded from any website like Dr.Klauda website Please let me know your suggestions. Thanks, Pramod -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
