Dear Gmx Users, I am trying to convert my trajectory using trjconv. My system is made of 10 ligands and protein. Protein is jumping divided into parts. The same is with my ligands. I am confused about the point 2 and 3:
2. Extract the first frame from the trajectory as reference for removing jumps if you want to remove jumps. Which option of trjconv is responsible for extraction of my 1st frame? 3. Remove jumps if you want to have them removed using the first frame trjconv -f traj.xtc -s *.tpr -pbc nojump (how to use 1st frame here extracted from previous point?) I would be really thankful! Steven
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