You should provide topology file, I do NOT need your MDP files. -- Dr. Vitaly V. Chaban, 430 Hutchison Hall, Chem. Dept. Univ. Rochester, Rochester, New York 14627-0216 THE UNITED STATES OF AMERICA
2011/10/31 ahmet yıldırım <ahmedo...@gmail.com>: > Dear Dr. Chaban, > > Firstly, thanks for your reply. I send you the input files that I used. > Please look at attached files. By the way, I am using Gromacs 4.5.3 > > Regards > > > > 30 Ekim 2011 02:53 tarihinde Dr. Vitaly V. Chaban <vvcha...@gmail.com> > yazdı: >> >> Hello Ahmet: >> >> The warnings originating from the LINCS algorithm are dee to either >> incorrect topology (TOP file) of certain particle or bad initial >> configuration (GRO file). >> >> If you don't provide this information about your problematic system, >> there is no chance to help you. >> >> -- >> Dr. Vitaly V. Chaban, 430 Hutchison Hall, Chem. Dept. >> Univ. Rochester, Rochester, New York 14627-0216 >> THE UNITED STATES OF AMERICA >> >> >> >> 2011/10/29 ahmet yıldırım <ahmedo...@gmail.com>: >> > Dear Dr. Chaban, >> > >> > I am studying on protein modelling using Gromacs software for 1-2 years. >> > I >> > have lincs warning error. I obtained the error "lincs warning" after >> > "mdrun >> > -deffnm protein-RUN" (finally step). I could not figure out this problem >> > for >> > weeks :-((( >> > >> > If can you help me I will be very very happy? :-( >> > >> > Sincerely yours >> > >> > Department of Physics, Siirt University, Siirt, Turkey >> > >> > -- >> > Dr.Ahmet YILDIRIM >> > > > > > -- > Ahmet YILDIRIM > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists