On Wed, Nov 2, 2011 at 2:06 PM, Alex <alexbioi...@yahoo.com> wrote: > Dear All > > I'd like to perfom a deuterium oerder parameters analysys in a system with > DPPC > + Protein + Water > I read that I've to make an index file that contains one group each for > every > carbon atom in the acyl-chain (starting > with the carbonyl-carbon and going further down). > Where can I get carbon atoms index in the acyl-chain to group them? Have I > to > open the DPPC in pdbviewer > yes, that's a way to do it.
> I need as well to make two index files: for sn1 and sn2 chains of DPPC. > yes, that is correct. > Have I to run g_order in both ndx files (sn1 and sn2)? > yes, that is also correct. make sure to write two different output files (sn1.out and sn2.out) > > Thanks > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >
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