larif sofiene wrote:
Greeting
i looking for residues forming Hydrogen bonds with one residue,i can't
get that.
Have you tried using an index group that specifies the residue of interest?
When using -hbm i get an xpm file that contain existence of hbond over
time without any indication about who's the other residues.(it is just
binary existence)
The index file produced with the -hbn flag maps to the existence matrix in
hbmap.xpm.
-Justin
is there a way to get residues engaged in the bond (with occupancy rate
if possible)
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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