On 18/11/2011 6:54 PM, swati patel wrote:
Hello Users,
I am facing a problem in obtaining topologies for my ligand.I tried
working on acpype,bt it seems very complex to me.PRODRG is easy but it
uses gromos87 force field.PRODRG 2.5 is still not available for download.
can anyone suggest me how to obtain topologies for my protein and
ligand using same force fields?
Suggestions can be found here -
http://www.gromacs.org/Documentation/How-tos/Steps_to_Perform_a_Simulation
Mark
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