김현식 wrote:
Dear Experts,
Hi,
Is there any tools in gromacs to get "Hydrophobic cores" of protein ?
I suppose that depends on what your definition is, but in all likelihood no, not
directly. A program like g_sas can give you nonpolar and polar surface areas as
well as volumes and surface atoms, which, through crafty use of index groups,
may provide you with something useful.
-Justin
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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