Hi Valerio, Check the help for both tools. That explains it all. Oh, and you're not correct ;)
Cheers, Tsjerk On Mon, Dec 5, 2011 at 4:42 PM, <vferra...@units.it> wrote: > Dear all, > > I need to calculate the RMSD of a protein during time. So that I've > calculated the trajectory; for the calculation which tool should I use? > g_rms or g_rmsdist ? Which is the difference between these two tools? If I'm > right the main difference is that with g_rms the structure at the time t is > superimposed to the reference structure before calculate the RMSD, while > with g_rmsdist the RMSD is calculated without any superimposition, am I > correct? > > Valerio > > ---------------------------------------------------------------- > This message was sent using IMP, the Internet Messaging Program. > > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use thewww interface > or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- Tsjerk A. Wassenaar, Ph.D. post-doctoral researcher Molecular Dynamics Group * Groningen Institute for Biomolecular Research and Biotechnology * Zernike Institute for Advanced Materials University of Groningen The Netherlands -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists