Dear Sir, I need to ask you that if I want only pdb coordinates in the resultant md-noPBC.xtc/md-noPBC.pdb file rather than the solvant atoms and coordinates then what should I do. because the water box causes very delay in loading of frames and its difficult to viualize the trajectory. kindly help me to get out of the broblem. I only want that my protein get display in vmd rather than the water box. the size of md-noPBC.xtc is 612 Mb md-noPBC.pdb is 13.2 GB
analysis is getting very slow and system is hanging. kindly help me out to fix this problem. Regards Thanks -- Saba Ferdous Research Scholar (M. Phil) National Center for Bioinformatics Quaid-e-Azam University, Islamabad Pakistan
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