Hello Justin, In your membrane protein simulation tutorial after making the topology, you have mentioned that "Placing the new gromos53a6_lipid.ff directory in $GMXLIB will allow you to use this force field system-wide." I suppose this is valid only for the proteins (and not membranes) to be processed through pdb2gmx using gromos53a6_lipid force-field, right? And to process a membrane using pdb2gmx we need to change the aminoacids.rtp file with the relevent POPC/DSPC/DPPC etc. entries. Right? Or can we somehow make pdb2gmx use the POPC/DPPC/DSPC.itp file?
Thanks a lot. Anirban
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