Am using mipch2-1.2.7. Is this the problem?
Sent from my BlackBerry® on Reliance Mobile, India's No. 1 Network. Go for it! -----Original Message----- From: aiswarya.pa...@gmail.com Date: Wed, 14 Dec 2011 13:09:19 To: Gromacs mail<gmx-users@gromacs.org> Reply-To: aiswarya.pa...@gmail.com Subject: Re: [gmx-users] submission error Mark, I still the same error. Thanks Sent from my BlackBerry® on Reliance Mobile, India's No. 1 Network. Go for it! -----Original Message----- From: Mark Abraham <mark.abra...@anu.edu.au> Sender: gmx-users-boun...@gromacs.org Date: Wed, 14 Dec 2011 23:03:59 To: Discussion list for GROMACS users<gmx-users@gromacs.org> Reply-To: Discussion list for GROMACS users <gmx-users@gromacs.org> Subject: Re: [gmx-users] submission error On 14/12/2011 10:30 PM, aiswarya pawar wrote: > Hi users, > > I have a submission script for gromacs mdrun to be used on IBM > cluster, but i get an error while running it. the script goes like this= > > #!/bin/sh > # @ error = job1.$(Host).$(Cluster).$(Process).err > # @ output = job1.$(Host).$(Cluster).$(Process).out > # @ class = ptask32 > # @ job_type = parallel > # @ node = 1 > # @ tasks_per_node = 4 > # @ queue > > echo "_____________________________________" > echo "LOADL_STEP_ID=$LOADL_STEP_ID" > echo "_____________________________________" > > machine_file="/tmp/machinelist.$LOADL_STEP_ID" > rm -f $machine_file > for node in $LOADL_PROCESSOR_LIST > do > echo $node >> $machine_file > done > machine_count=`cat /tmp/machinelist.$LOADL_STEP_ID|wc -l` > echo $machine_count > echo MachineList: > cat /tmp/machinelist.$LOADL_STEP_ID > echo "_____________________________________" > unset LOADLBATCH > env |grep LOADLBATCH > cd /home/staff/1adf/ > /usr/bin/poe /home/gromacs-4.5.5/bin/mdrun -deffnm /home/staff/1adf/md > -procs $machine_count -hostfile /tmp/machinelist.$LOADL_STEP_ID > rm /tmp/machinelist.$LOADL_STEP_ID > > > i get an out file as= > _____________________________________ > LOADL_STEP_ID=cnode39.97541.0 > _____________________________________ > 4 > MachineList: > cnode62 > cnode7 > cnode4 > cnode8 > _____________________________________ > p0_25108: p4_error: interrupt SIGx: 4 > p0_2890: p4_error: interrupt SIGx: 4 > p0_2901: p4_error: interrupt SIGx: 15 > p0_22760: p4_error: interrupt SIGx: 15 > > > an error file = > > Reading file /home/staff/1adf/md.tpr, VERSION 4.5.4 (single precision) > Sorry couldn't backup /home/staff/1adf/md.log to > /home/staff/1adf/#md.log.14# > > Back Off! I just backed up /home/staff/1adf/md.log to > /home/staff/1adf/#md.log.14# > ERROR: 0031-300 Forcing all remote tasks to exit due to exit code 1 > in task 0 Looks like a problem with file writing privileges or maybe disk quota. Either make a new run directory or clean up before using this job script, and see how you go. Mark -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
-- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists