Dear GROMACS users,
I have a problem
about trjconv -pbc nojump, I have 2 micelles in the end of my simulation.
For analysis I should do three steps for micelle clustering at
http://www.gromacs.org/Documentation/How-tos/Micelle_Clustering?highlight=micelle+clusteringÂ
Steps 1 and 2 work good and when I view my trajectory after step2 by :
ngmx -f a_cluster.gro -s a_cluster.tpr
is viewed 2 micelles, but when I did step 3 (trjconv -nojump) and after do :
ngmx -f a_cluster.xtc -s a_cluster.tpr
has been created 1 micelle and reminder of monomers have been collected as some
groups at different places.
May I ask you to help me, please?
Thank you
Best Regards
Sara
--
gmx-users mailing list gmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-requ...@gromacs.org.
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
