On 10/01/2012 5:45 PM, Dialing Pretty wrote:
Dear Mark,
If "--disable-threads ", how it will influence the function of GROMACS?
By preventing you from running mdrun with a separate execution thread in
parallel on each physical processor that your machine has. If you need
parallel functionality, compile with MPI enabled.
Secondly, for the webpage you introduced to me
"http://www.gromacs.org/Downloads/Installation_Instructions/Cygwin_HOWTO";,
"Edit your login files to source /usr/local/gromacs/bin/GMXRC (or
manually add /usr/local/gromacs/man to the MANPATH and check that
/usr/local/bin is in the PATH)" is a little difficult to me. What is
"GMXRC"? What is the login files? How to find the MANPATH? How do I
know whther /usr/local/bin is in the PATH is in the path? How can
source /usr/local/gromacs/bin/GMXRC?
That page contains the strongly-worded advice to check the normal
GROMACS installation instructions, which has a fuller discussion of this
"getting access to GROMACS" issue. Please search the web for tutorials
and discussion of how UNIX PATH environment variables function.
Mark
I am looking forward to getting a reply from you.
Dialing
*From:* Mark Abraham <mark.abra...@anu.edu.au>
*To:* Discussion list for GROMACS users <gmx-users@gromacs.org>
*Sent:* Tuesday, 10 January 2012 12:29 PM
*Subject:* Re: [gmx-users] q question related to gromacsinstallation
by cygwin
On 10/01/2012 12:24 PM, Dialing Pretty wrote:
Dear All,
I have tried to install gromacs-4.5.5 by cygwin but I meet the
following problems.
I am looking forward to getting your suggestions on how to solve the
problem.
Dialing
$ make
Making all in include
make[1]: Entering directory `/cygdrive/d/GROMACS2/gromacs-4.5.5/include'
Making all in .
make[2]: Entering directory `/cygdrive/d/GROMACS2/gromacs-4.5.5/include'
make[2]: Nothing to be done for `all-am'.
make[2]: Leaving directory `/cygdrive/d/GROMACS2/gromacs-4.5.5/include'
Making all in types
make[2]: Entering directory
`/cygdrive/d/GROMACS2/gromacs-4.5.5/include/types'
make[2]: *** No rule to make target `all'. Stop.
make[2]: Leaving directory
`/cygdrive/d/GROMACS2/gromacs-4.5.5/include/types'
Makefile:479: recipe for target `all-recursive' failed
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/cygdrive/d/GROMACS2/gromacs-4.5.5/include'
Makefile:347: recipe for target `all-recursive' failed
make: *** [all-recursive] Error 1
The actual error occurred further up, so we cannot give specific help.
Be sure you are following the instructions here
http://www.gromacs.org/Downloads/Installation_Instructions/Cygwin_HOWTO,
in particular --disable-threads.
Mark
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