On Fri, Jan 13, 2012 at 4:57 PM, Mark Abraham <mark.abra...@anu.edu.au> wrote: > On 13/01/2012 7:08 PM, lina wrote: >> >> Hi, >> >> Failed to lock: md.log. No locks available. > > > mdrun locks various files at various points. If it can't then GROMACS won't > continue, but the problem lies with the file system, and not with GROMACS. > Possibly some phantom process still thinks it owns the file.
It's something relevant to the server. I am not experienced to figure it out even did some rough try. will drop an email to administrator. Thanks, > > Mark > > >> >> still the same problem I met before, >> >> once I terminated, resume not work, there is a md.log file. >> >> $ mount >> /dev/sda1 on / type ext3 (rw) >> none on /proc type proc (rw) >> none on /sys type sysfs (rw) >> none on /dev/pts type devpts (rw,gid=5,mode=620) >> usbfs on /proc/bus/usb type usbfs (rw) >> none on /dev/shm type tmpfs (rw) >> none on /proc/sys/fs/binfmt_misc type binfmt_misc (rw) >> sunrpc on /var/lib/nfs/rpc_pipefs type rpc_pipefs (rw) >> honeydewlocal:/vol/hpc_vol/HomeHPC on /home type nfs >> (rw,rsize=32k,wsize=32k,intr,hard,tcp,addr=192.168.5.83) >> >> The /home is mounting on the last one. >> >> CPU: 8 Intel(R) Xeon(R) Dual-Core 3.33 Ghz >> Memory: 114GB RAM >> HDD Size: 744GB >> OS: CentOS 4 (64-bits) >> >> Thanks for any suggestions, >> >> any additional info you need please let me know, >> >> Best regards, > > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists