Hi GROMACS users, I wish to study proteins behaviour,With the help of command genbox -ci protein.gro -nmol <no of protein >.. -box <box size> -o <out put file> -p <topology file> I am putting the four peptide at random positions, but I need to put theem close enough so they are forming at least one hydrogen bond or at least enough close to start interact immediately with one another .. I don´t wish to reduced by box size ... All suggestions are appreciated for my problem Thank you in advance.. Have a nice day..
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