On 25/02/2012 6:30 PM, venkatesh s wrote:
Hi
      i got that error in the step of pdb2gmx what can i do
i read also http://www.gromacs.org/Documentation/Errors#Residue_%27XXX%27_not_found_in_residue_topology_database
can any one tell exact reason and how i handle further

The exact reason is on that link. You will need to read it and think about what it means. If it doesn't mean anything, then you need to learn some more in chapter 5 of the manual (and/or the links in that web page section) about how things work.

Mark
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