On 30/03/2012 10:28 PM, Erik Marklund wrote:
And I replied "What's your dssp version? The most recent ones have different flags that are not yet supported by gromacs."


... and I asked whether you'd read and followed the advice in do_dssp -h. Asking for more help without appearing to have used that you've already received doesn't show much respect for the time people have already given. Where's their incentive to keep helping you? :-)

Mark

Erik

30 mar 2012 kl. 13.23 skrev Albert:

Hello:
 there is some problem for my do_dssp, it always claimed:

Program do_dssp_d, VERSION 4.5.5
Source code file: do_dssp.c, line: 572
Fatal error:
Failed to execute command: /usr/local/bin/dssp -na ddg1g7Id ddRwthIi > /dev/null 2> /dev/null


someone suggest to compile gromacs with double precision and I recompiled it with --enable-double
but it still doesn't work.....

does anybody else have any suggestions?

THX
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-----------------------------------------------
Erik Marklund, PhD
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,    75124 Uppsala, Sweden
phone:    +46 18 471 6688        fax: +46 18 511 755
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