g_saltbr? If you have salt bridges you already know about and want to look at, you can always go with g_dist per pair manually.
On 2012-04-05 12:23:02PM +0400, James Starlight wrote: > Dear Gromacs Users! > > > I'd like to monitor origin and destabilisation of salt-bridges during > simulation time. In particular I want to define some charged residues > within selection groups to monitor both of intra-protein as well as > protein-protein interactions. In past I've used only > g_hbond<http://manual.gromacs.org/online/g_hbond.html>utillity to > monitor Hbonds within selection. Is there any specified program > for such task but with salt-bridges only ? > > > Thanks for help, > > James > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- ================================================================== Peter C. Lai | University of Alabama-Birmingham Programmer/Analyst | KAUL 752A Genetics, Div. of Research | 705 South 20th Street p...@uab.edu | Birmingham AL 35294-4461 (205) 690-0808 | ================================================================== -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
