Because if all you did to generate the 2nd tpr file was tpbconv -extend, then both tpr files are same *except* for the simulation time. (gmxdump should prove it)
On 2012-04-05 11:57:41PM -0700, Acoot Brett wrote: > Dear All, > > Before and after extention we have 2 trajectorty files, and by trjcat we got > we, then we can do the g_rms > > g_rms -s *.tpr -f *_noPBC.xtc -o rmsd.xvg -tu ns > > But here for the g_rms command I find no matter whether we use the *.tpr of > the initiation of the production MD, or the *.tpr for the initiation of the > extension part, the rmsd.xvg curves seems same. > > Will you please give some comment on it? > > Cheers, > > Acoot > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- ================================================================== Peter C. Lai | University of Alabama-Birmingham Programmer/Analyst | KAUL 752A Genetics, Div. of Research | 705 South 20th Street p...@uab.edu | Birmingham AL 35294-4461 (205) 690-0808 | ================================================================== -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
