Hello. You have to check whether the formyl residue is defined with other name in the force field files. If not, you have to get the parameters for it. Best regards Lucio Montero El jue, 12-04-2012 a las 00:40 -0700, Shima Arasteh escribió: > Dear Gromacs friends, > > > I attached my .pdb file in this message, as you see, I have formyl > residue in it. I'd like to get a .gro output of it by using this > commands, but getting the fatal error: > > > # pdb2gmx -f glc.pdb -o glc.gro -ignh -ter -water spc > > > > Fatal error: > Residue 'FOR' not found in residue topology database > > > How can I solve this problem? > > > > Thanks , > Shima > > > > > > > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
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