On 2012-04-22 17:11, Mark Abraham wrote:
On 22/04/2012 10:58 PM, sai nitin wrote:
Hi all,
Im using Charmm27 Forcefield to generate topology of my protein by
using PDB2GMX tool but is showing
Fatal Error
Atom OG is used in an interaction of type atom in the topology
database, but an atom of that name was not found in residue
number 178.
Can any body tell me how to solve this...
No. We don't know your pdb2gmx command line or what is in your system or
what is happening at residue 178.
Mark
more likely your protein is missing a side chain.
--
David van der Spoel, Ph.D., Professor of Biology
Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone: +46184714205.
sp...@xray.bmc.uu.se http://folding.bmc.uu.se
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