Thanks Justin and Anirban for taking this long in TM simulations. I'm following Justin's tutorial majorly and taking some clues from Anirban's too when I need further clarification.
>From both of your guidelines I could understand wht I should be doing before solvating the system. Now, I have a question that how many iterations I should perform with inflateGRO program and what is the basis to stop and move with solvation step? Justin's one says that he could reach ~72 Å2 (which is above the expt. value ~62Å2). But when I am exactly following the tutorial with same KALP peptide. I am ending up with 'Area per lipid: 3.73355898918962 nm^2' within 10 iterations which is far lower than Justin's. Why? Thanks. -- View this message in context: http://gromacs.5086.n6.nabble.com/GPCR-MD-Tutorial-Using-GROMACS-URL-tp4930034p4933801.html Sent from the GROMACS Users Forum mailing list archive at Nabble.com. -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
