Thanks a lot Peter. Will try out with this. -Anirban
On Wed, May 2, 2012 at 9:42 PM, Peter C. Lai <p...@uab.edu> wrote: > http://uab.hyperfine.info/~pcl/files/popc36/ > > These were generated for the following work: (please reference): > Lai, P.C. and Crasto, C.J. > Beyond Modeling: All-Atom Olfactory Receptor Model Simulations > Front. Gene. > Volume 3 Year 2012 Number 61 > DOI: 10.3389/fgene.2012.00061 > > On 2012-05-02 05:49:17PM +0530, Anirban Ghosh wrote: > > Hi ALL, > > > > I was looking for a CHARMM36 format (atom-types) equilibrated POPC > bilayer > > (PDB/GRO) to use with the CHARMM36 FF in GROAMCS 4.5.5. I downloaded one > > from Dr. Klauda's site ( > > http://terpconnect.umd.edu/~jbklauda/research/download.html), but that > > popc.pdb (under CHARMM36 FF) seem to have different atom-types (like P1 > in > > place of P, etc.) and hence pdb2gmx throws up error when processed with > > CHARMM36 FF option. Is there any CHARMM36 FF format equilibrated POPC > > bilayer available online, or can someone provide, please? > > Thanks a lot in advance. > > > > > > Regards, > > > > Anirban > > > -- > > gmx-users mailing list gmx-users@gromacs.org > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to gmx-users-requ...@gromacs.org. > > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > -- > ================================================================== > Peter C. Lai | University of Alabama-Birmingham > Programmer/Analyst | KAUL 752A > Genetics, Div. of Research | 705 South 20th Street > p...@uab.edu | Birmingham AL 35294-4461 > (205) 690-0808 | > ================================================================== > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >
-- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists