On 6/13/12 8:27 AM, Malai wrote:
HI,

Sorry for wrongly typing. The command I issued is:  grompp -v -f hex1.mdp -c
hex1.pdb -p hex1.top -o hex1.tpr.

The error is bellow:


Error:
Program grompp, VERSION 4.5.4
Source code file: futil.c, line: 491

File input/output error:
hex1.gro
For more information and tips for troubleshooting, please check the GROMACS
website at http://www.gromacs.org/__Documentation/Errors
<http://www.gromacs.org/Documentation/Errors>


Even with the corrected command, I see no way for this error to come up. There is no reference to a .gro file anywhere in your command.

-Justin

--
========================================

Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================


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