Wow, just did that.
In Debian have to use 4.5.5-2 version of Gromacs from sid repository.
Still have to use the oldest dssp
http://swift.cmbi.ru.nl/gv/dssp/HTML/dsspcmbi
It was simply Gromacs issue with no ways around.
And it woks:)
Just wondering,
What are other efficient ways of analyzing secondary structure instead
of dssp? (novice question)
Good luck to everybody
On 14.06.2012 11:59, Denis Kazakiewicz wrote:
Hello
Dear Gromacs users.
This is many times discussed issue, however nothing seems to work so far
do_dssp returns "Segmentation fault"
It is the oldest version of dssp: dsspcmbi
Gromacs 4.5.5 on Debian i386
I did use export DSSP=/path to dssp
1. What is possibly could be?
2. Any other efficient ways of analyzing secondary structure without
do_dssp (with VMD, may be)?
THANKS in advance
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