Dear Sir/Madam This is Nidhi Jatana. I downloaded the lastest version of gromacs i.e. 4.5.5 from the link (ftp://ftp.gromacs.org/pub/gromacs/gromacs-4.5.5.tar.gz) and have installed it but whenever I am trying to run any of the programs, its showing me the version to be 4.0.5. For example, I was trying to run the lysozyme tutorial and while running genion i gave in the command:
genion -s ions.tpr -o 1AKI_solv_ions.gro -p topol.top -pname NA -nname CL -nn 8 and getting this as the output (not posted the entire output) ":-) G R O M A C S (-: Glycine aRginine prOline Methionine Alanine Cystine Serine :-) VERSION 4.0.5 (-:" I have installed it thrice, but the problem persists. Infact, I am getting an error (Fatal error: No such moleculetype NA) while running minimization. And when I saw the user-mailing lists, it shows me that there is some problem with the version. What should I do? Should I install the previous version? Thanking you Regards -- Nidhi Jatana Senior Research Fellow Bioinformatics Center Sri Venkateswara College (University of Delhi) Dhaula Kuan New Delhi-110021.
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