On 6/27/12 3:38 AM, Shima Arasteh wrote:
As Justin suggested me, I added the FOR residue to the .rtp file of FF and then added the
FOR as a protein in residuetypes.dat . FOR is the first residue in protein chain. I chose
none as the N-terminus . But after processing the .pdb file the FOR is identified itself
but "not" identified as protein.
How so? What line did you add to residuetypes.dat, and what was the exact
problematic output of pdb2gmx?
-Justin
--
========================================
Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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