Dear Thomas, Thanks for ur reply. I have visualized my trajectory and found no water molecule in between. Moreover, there are no residues in between the "Residue" and GTP molecule too. I feel I have already applied a large force for the pulling. Still I will consider you suggestion. One query regarding your suggestion. It one happens to find a water molecule in between the pulling groups, will removal of that water be a solution, because during the course of simulation it may happen that some other molecule again come between?
Thanks anyways for you reply and suggestions. --Neeru -- View this message in context: http://gromacs.5086.n6.nabble.com/Final-state-not-reached-in-pulling-simulation-tp4999387p4999396.html Sent from the GROMACS Users Forum mailing list archive at Nabble.com. -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Only plain text messages are allowed! * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
