Ok... I will try other options. Thanks Kavya
On Fri, Jul 13, 2012 at 10:23 PM, Justin A. Lemkul <jalem...@vt.edu> wrote: > > > On 7/13/12 12:05 PM, Kavyashree M wrote: >> >> Its 50ns 25000 frames. the xtc file is 695MB. it has 16GB RAM. So will >> that be insufficient? I have previously run other analysis which used to >> take >> huge memory, for eg. covariance analysis, in a system with much lesser >> memory >> even though CPU usage was low the job used to finish. But in this case its >> not >> so. >> > > I can't see a reason why the file itself would present a problem. I have > run g_saltbr on similarly sized systems. Sorry, I can't offer an > explanation as to why it's stopping prematurely. > > > -Justin > > -- > ======================================== > > Justin A. Lemkul, Ph.D. > Research Scientist > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > ======================================== > > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Only plain text messages are allowed! > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the www > interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Only plain text messages are allowed! * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists