----- Forwarded Message -----
From: yousef nademi <yousef_nad...@yahoo.com>
To: Justin Lemkul <jalem...@vt.edu>
Cc:
Sent: Friday, July 27, 2012 10:02 AM
Subject: Re: [gmx-users] p_N head group lipid orientation
thank you for responding
but i want the figure probability versus P-N vector angle and g_sgangle dont
give this output .just g_angle give this output
----- Original Message -----
From: Justin Lemkul <jalem...@vt.edu>
To: yousef nademi <yousef_nad...@yahoo.com>; Discussion list for GROMACS users
<gmx-users@gromacs.org>
Cc:
Sent: Friday, July 27, 2012 9:57 AM
Subject: Re: [gmx-users] p_N head group lipid orientation
On 7/27/12 12:50 PM, yousef nademi wrote:
>
> hi everybody
> i want to calculate the P_N orientation of dppc lipid bilayer but in g_angle
> index file shoud have at least 3 atom but in P_N vector i want to define 2
> atom
> is there anyone know what should i do?
>
g_sgangle with the -z option (assuming the bilayer is in the x-y plane) should
do this. The index group can contain two atoms (or a suitable multiple of two
defining all the P and N atoms).
-Justin
-- ========================================
Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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