On 8/28/12 1:25 PM, Lingyun Wang wrote:
Hi all,
I want to model a protein on the surface of a bilayer membrane. Is it
reasonable to add less water molecules to the bilayer side without protein? Or
the water should be the same on both side of membrane? Thanks.
Given periodic boundaries conditions, the amount of water on either "side" is
irrelevant.
-Justin
--
========================================
Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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