GROMACS uses nm as the unit of length, so this is 38 Angstroms, shouldn't be a problem.
On 2012-08-31, at 2:23 PM, Bogdan Costescu <bcoste...@gmail.com> wrote: > On Fri, Aug 31, 2012 at 8:42 PM, mohan maruthi sena > <maruthi.s...@gmail.com> wrote: >> Hi all, >> I have built topology for elastic network as follows(the >> atoms which fall with in a distance less than 6 angtroms are bonded). >> [bonds] >> ;ai aj funct bo kb >> 2 1 1 3.80444752888 61.9 > > Less than 6 Angstrom ??? You need to read the topology chapter of the > manual again. And then again. It will save you lots of time later. > Hint: some units are wrong. > > Good luck! > Bogdan > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
