Hi I have an alcohol system and I want to calculate the number of H bonds during the trajectory. My atom type labels are C2-C2-C2-CO-OH-HO. CO denotes carbon bonded to oxygen, OH denotes alcohol oxygen, and HO denotes alcohol hydrogen. In g_hbond how do I specify my groups to consider for H bonding. If I uses group 0 which is the whole system it says that I have twice as many acceptors as donors, which shouldn't be the case.
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