Hi Rama, I bet that wasn't the only output you got. Two things can usually happen with do_dssp. Either you chose the wrong group for analysis, or there is a problem with the version of DSSP. Probably the latter: DSSP syntax changed recently, and I think that GMX 4.5.5 can't deal with that. There should be capital punishment on syntax changes on such programs... Try digging up an older version of DSSP.
Cheers, Tsjerk On Thu, Oct 4, 2012 at 11:18 AM, rama david <ramadavidgr...@gmail.com> wrote: > hi Gromacs Friend i Install dssp 2.0.4 . > I am using gromacs 4.5.5 > I put dssp in /usr/local/bin > > I try with export DSSP=/usr/local/bin/dssp > > When Run dssp with simple pdb file it run > but when I run do_dssp command i got following output.. > > > Segmentation fault (core dumped) > > (dssp -h > DSSP 2.0.4 options: > -h [ --help ] Display help message ) > > > I also goes through archive but not find out the answer. > > > Please tel me how to figure out these problem > > > With best wishes and regards.. > rama david > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- Tsjerk A. Wassenaar, Ph.D. post-doctoral researcher Biocomputing Group Department of Biological Sciences 2500 University Drive NW Calgary, AB T2N 1N4 Canada -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
