Dear Justin Sorry for the inconvenience in the previous Mail . I am Much obliged for your Previous help Now I am following Your Lipid Protein Tutorial I am using DPPC128.pdb And I Have Downloaded the DPPC.itp and topol_DPPC.top When I run the energy Minimization (em.mdp Downloded form your website) for the this Lipid I have got Following error
Warning: 1-4 interaction between 1256 and 1259 at distance 3.831 which is larger than the 1-4 table size 2.200 nm These are ignored for the rest of the simulation This usually means your system is exploding, if not, you should increase table-extension in your mdp file or with user tables increase the table size I am using Default .itp , .top (Down Loaded from website quoted by you) and Dppc.gro (created by Editconf tool) Why this error comes ? I Have not manually constructed .top for lipids May be there are several discussion about this error in Mailing Archive . Here You Have not mentioned this type of error in your website Where have i committed Mistake? Thanks In Advance -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
