>I've never had an issue with similar commands. Can you provide us with your >full g_rdf command line? Have you verified that the index group for the >arginine residue is correct? Can you provide a link to an image of the >resulting RDF?
>-Justin My full g_rdf command line is as in my first post (except path and full names of files): /opt/software/gromacs/gromacs-4.5.3-intel/bin/g_rdf -f MT7w-145.trr -s MT7w-145.tpr -n rs.ndx -o MT7w-145.RD-r205tipCOG.xvg -bin 0.05 -pbc -rdf res_cog Atom numbers of the group in index file rs.ndx was taken from initial conformation MT7w.gro file (3rd column) for NHH-NHH atoms of side chain tip of 205 Arg. These were verified to be correct. RDF curve image inserted as rdf.bmp: <http://gromacs.5086.n6.nabble.com/file/n5003142/rdf.bmp> Igor -- View this message in context: http://gromacs.5086.n6.nabble.com/Strange-form-of-RDF-curve-tp5003001p5003142.html Sent from the GROMACS Users Forum mailing list archive at Nabble.com. -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
