yes,actually it works fine as long as you have one chain in you .top file . if u have more subunits, u are supposed to merge the chains using the appropriate value for -chainsep option in pdb2gmx
2012/11/22, Steven Neumann <s.neuman...@gmail.com>: > There was an error with index < 1 which this script assigned to bond > part. The script provided here: > > http://www.ks.uiuc.edu/Research/vmd/script_library/scripts/top2psf/top2psf.pl > > works much better. > > Steven > > On Thu, Nov 22, 2012 at 12:50 PM, francesco oteri > <francesco.ot...@gmail.com> wrote: >> hi,it would be nice knowing the errors. >> >> Francesco >> >> >> 2012/11/22, Steven Neumann <s.neuman...@gmail.com>: >>> Dear Gmx Users, >>> >>> Is it possible to convert topology produced by Gmx and convert it ont >>> the psf file? I used Justin script but when I load pdb and psf in VMD >>> then there are some errors. >>> Would you help? >>> >>> Steven >>> -- >>> gmx-users mailing list gmx-users@gromacs.org >>> http://lists.gromacs.org/mailman/listinfo/gmx-users >>> * Please search the archive at >>> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >>> * Please don't post (un)subscribe requests to the list. Use the >>> www interface or send it to gmx-users-requ...@gromacs.org. >>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >>> >> >> >> -- >> Cordiali saluti, Dr.Oteri Francesco >> -- >> gmx-users mailing list gmx-users@gromacs.org >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> * Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> * Please don't post (un)subscribe requests to the list. Use the >> www interface or send it to gmx-users-requ...@gromacs.org. >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- Cordiali saluti, Dr.Oteri Francesco -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists