On 11/22/12 2:36 AM, rama david wrote:
Dear user ,
I simulate the two protein in random coil position, when they come close
they form antiparallel beta sheet structure.
I want to calculate the change in hydrophilic and hydrophobic surface
area over my simulation time.
For usig g_sas Should I have to make the different index group for
hydrophilic and hydrophobic residues
Or should only have to select the option protein both the time.
The whole protein should always be the group for the surface calculation.
Whatever subset of those atoms (i.e. residues of interest) can be the output group.
-Justin
--
========================================
Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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