Hi Kavya, Can you better describe your system? As Mark suggested, could you supply some number?
Francesco 2012/12/12 Mark Abraham <mark.j.abra...@gmail.com> > On Wed, Dec 12, 2012 at 9:06 AM, Kavyashree M <hmkv...@gmail.com> wrote: > > > Dear users, > > > > I was calculating solvent accessible surface area for a trajectory > > using g_sas. I used an index file with 3 sets (A, B, C) of mutually > > exclusive residues but summing up to 20 amino acids. Then using > > g_sas calculated sas for these 3 sets separately and whole protein > > separately for the same trajectory. > > I was expecting that the average value of > > Total surface area (protein) ~ Total surface area (A)+Total surface area > > (B)+Total surface area (C) > > But it is not so. > > Could anyone explain me why? > > > > Not without seeing any numbers. You're probably thinking that the surface > area of A excludes the interfacial area to the other sets, but it doesn't. > > Mark > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- Cordiali saluti, Dr.Oteri Francesco -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists